PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025384-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 99aa    MW: 11543.4 Da    PI: 10.7386
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025384-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++++++G g W++++ + g++R++k+c++rw++yl
    NNU_025384-RA 10 KGSWTREEDTLLRKCIEKYGEGKWHLVPXRAGLRRCRKSCRLRWLNYL 57
                     799********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.493561IPR017930Myb domain
SMARTSM007174.1E-14959IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-191057IPR009057Homeodomain-like
PfamPF002494.7E-161057IPR001005SANT/Myb domain
SuperFamilySSF466898.13E-211180IPR009057Homeodomain-like
CDDcd001673.39E-111257No hitNo description
Gene3DG3DSA:1.10.10.601.9E-55880IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MEGRSLGLIK GSWTREEDTL LRKCIEKYGE GKWHLVPXRA GLRRCRKSCR LRWLNYLKPD  60
IKRGKFTLDE ADLIFRLHKL LVDCPGGRPM ISRITGTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-13881577B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265048.11e-40PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB90
SwissprotQ9FNV82e-36MY114_ARATH; Transcription factor MYB114
SwissprotQ9FNV93e-36MY113_ARATH; Transcription factor MYB113
TrEMBLM4T7V92e-41M4T7V9_9R
STRINGVIT_14s0006g01280.t015e-40(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-37myb domain protein 114